NCGR - Publications 2008

2008 NCGR Publications

Neil A. Miller,Andrew D. Farmer, Stephen F. Kingsmore, Raymond J. Langley, Faye D. Schilkey, Joann Mudge, John A. Crow, Alvaro J. Gonzalez, Ryan J. Kim, Jennifer C. van Velkinburgh, Gregory D. May, C. Forrest Black, M. Kathy Myers, John P. Utsey, Nicholas S. Frost, and Ernest F. Retzel 2008 Management of High-Throughput DNA Sequencing Projects: Alpheus J Comp Sci Syst Biol 2008 [Full Text]

Kaukola T, Tuimala J, Herva R, Kingsmore S, Hallman M. 2008 Cord immunoproteins as predictors of respiratory outcome in preterm infants. Am. J. Obstet. Gynecol. Nov 20. PMID: 19026401

Joann Mudge, Neil A. Miller, Irina Khrebtukova, Ingrid E. Lindquist, Gregory D. May, Jim J. Huntley, Shujun Luo, Lu Zhang, Jennifer C. van Velkinburgh, Andrew D. Farmer, Sharon Lewis, William D. Beavis, Faye D. Schilkey, Selene M. Virk, C. Forrest Black, M. Kathy Myers, Lar C. Madar, Ray J. Langley, John P. Utsey, Ryan W. Kim, Rosalinda C. Roberts, Sat Kirpal Khalsa, Meredith Garcia, Victoria Ambriz-Griffith, Richard Harlan, Wendy Czika, Stanton Martin, Russel D. Wolfinger, Nora I. Perrone-Bizzozero, Gary P. Schroth, Stephen F. Kingsmore (2008) Genomic Convergence Analysis of Schizophrenia: mRNA Sequencing Reveals Altered Synaptic Vesicular Transport in Post-Mortem Cerebellum PLos One 2008 PMID: 18985160 [Abstract]

Wang ET, Sandbery R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. (2008) Alternative isoform regulation in human tissue transcriptomes Nature 2008 PMID: 18978772

Salsbury Jr FR, Crowder MW, Kingsmore SF, Huntley JJA. (2008) Molecular dynamic simulations of the metallo-beta-lactamase from Bacteroides fragilis in presence and absence of a tight-binding inhibitor. J Mol Model 2008 PMID: 19039608

Kingsmore SF, Kennedy N, Halliday HL, Van Velkinburgh JC, Zhong S, Gabriel V, Grant J, Beavis WD, Tchernev VT, Perlee L, Lejnine S, Grimwade B, Sorette M, Edgar JDM. (2008) Identification of diagnostic biomarkers for infection in premature neonates Mol Cell Proteomics. Jul 13, 2008 PMID: 18622029 [Abstract]

Woods CW, Feezor RJ, Kingsmore SF. (2008) Sepsis and the Genomic Revolution: Risk, Diagnosis, Prognosis, and Therapeutics. Genomic and Personalized Medicine,eds.Willard H and Ginsburg G. Elsevier. 2008

Kingsmore SF, Lindquist IE, Mudge J, Gessler DD, Beavis WD. (2008) Genome-wide association studies: progress and potential for drug discovery and development. Nat Rev Drug Discov. 2008 Mar;7(3):221-30. Review. PMID: 18274536 [Abstract] [PubMed - indexed for MEDLINE]

Sugarbaker DJ, Richards WG, Gordon GJ, Dong L, De Rienzo A, Maulik G, Glickman JN, Chirieac LR, Hartman ML, Taillon BE, Du L, Bouffard P, Kingsmore SF, Miller NA, Farmer AD, Jensen RV, Gullans SR, Bueno R. (2008) Transcriptome sequencing of malignant pleural mesothelioma tumors. Proc Natl Acad Sci U S A. 2008 Mar 4;105(9):3521-6. Epub 2008 Feb 26. PMID: 18303113 [Abstract ]

Pendleton, R., Kitchen, S., Mudge, J., and McArthur, E.D. (2008) Origin of the Flax Cultivar 'Appar' and Its Position within the Linum perenne Complex. International Journal of Plant Sciences 169, 445-453. [Abstract] [Full Text]

Mudge, J., Farmer, A.D., and May, G.D. The Long and the Short of it: Uniqueness of short DNA sequences in plants. Plant & Animal Genomes XVI Conference, January 12-16, 2008, San Diego, CA [Abstract]

Mian MA, Zhang Y, Wang ZY, Zhang JY, Cheng X, Chen L, Chekhovskiy K, Dai X, Mao C, Cheung F, Zhao X, He J, Scott AD, Town CD, May, GD (2008) Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages. BMC Plant Biol. 2008 Mar 4;8:27. PMID: 18318913 [Abstract] [Full Text]

Schilkey, F.D., Miller, N.A., Mudge, J., Mader, L.C., Weems, D.,Virk, S.M., Black, C.F., Myers, M.K., Rice, M., Gomez, T., et al. Alpheus: A Web Software Tool for Variant Detection using Next-Generation Sequencing Technologies. Plant & Animal Genomes XVI Conference, January 12-16, 2008, San Diego, CA [Abstract]