2009 NCGR Publications

Jong-Il Kim, Young Seok Ju1, Hansoo Park, Sheehyun Kim, Seonwook Lee, Jae-Hyuk Yi, Joann Mudge, Neil A. Miller, Dongwan Hong, Callum J. Bell, Hye-Sun Kim, In-Soon Chung, Woo-Chung Lee, Ji-Sun Lee, Seung-Hyun Seo, Ji-Young Yun, Hyun Nyun Woo, Heewook Lee, Dongwhan Suh, Seungbok Lee, Hyun-Jin Kim, Maryam Yavartanoo, Minhye Kwak, Ying Zheng, Mi Kyeong Lee, Hyunjun Park, Jeong Yeon Kim, Omer Gokcumen, Ryan E. Mills, Alexander Wait Zaranek, Joseph Thakuria, Xiaodi Wu, Ryan W. Kim, Jim J. Huntley, Shujun Luo, Gary P. Schroth, Thomas D. Wu, HyeRan Kim, Kap-Seok Yang, Woong-Yang Park, Hyungtae Kim, George M. Church, Charles Lee, Stephen F. Kingsmore, & Jeong-Sun Seo A highly annotated whole-genome sequence of a Korean individual nature 2009 PMID: 19587683 [Full Text]

Kingsmore SF, van Velkinburgh JC, Mudge J, May GD Generation II DNA sequencing technologies Drug Discovery World 2009 Spring:60-74 [Full Text]

Varshney R. K., Nayak S. N., Gregory D. May and Jackson S. A. Next-generation sequencing technologies and their implications for crop genetics and breeding Trends in Biotechnology 2009 PMID: 19679362 [Abstract]

Salsbury F. R. Jr., Crowder, M. W., Stephen F. Kingsmore Huntley J. J. Molecular dynamic simulations of the metallo-beta-lactamase from Bacteroides fragilis in the presence and absence of a tight-binding inhibitor. Journal of Molecular Modeling 2009 PMID: 19039608

Singer S. R., Maki S. L., Andrew D. Farmer, Ilut D., Gregory D. May, Cannon S. B., and Doyle J. J. Venturing beyond beans and peas: What can we learn from Chamaecrista? Plant Physiology 151:1-7 2009 PMID: 19755538 [Full Text]

Varshney R.K., Penmetsa R.V., Dutta S., Kulwal P.L., Saxena R.K., Datta S., Sharma T.R., Rosen B., N. Carrasquilla-Garcia N., Andrew D. Farmer, Dubey A., Saxena K.B., J. Gao J., Fakrudin B., Singh M.N., Singh B.P., Upadhyaya H.D., Mallikarjuna N., Town C.D., Bruening G.E., He G., Gregory D. May, McCombie R., S. A. Jackson S.A., Singh N.K. and Cook D.R. Pigeonpea genomics initiative (PGI): An international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding DOI 10.1007/s11032-009-9327-2 2009

Varshney R.K., Thudi M., Gregory D. May, and Jackson S.A. Legume Genomics and Breeding. Plant Breeding Reviews 33:257-304 2009

Nelson R.T., Avraham S., Shoemaker R.C., Gregory D. May, Ware D. and Gessler DD Applications and methods utilizing the simple semantic web architecture and protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration. BMC Bioinformatics 10:309doi:10.1186/1471-2105-10 2009

Cannon S.B., Gregory D. May, and Jackson, S.A. Comparative Genomics of Legumes Three Sequenced Legume Genomes and Many Crop Species: Rich Opportunities for Translational Genomics. Plant Physiology 10.1104/pp.109.144659 2009

Tsalik EL, Jones D, Nicholson B, Waring L, Liesenfeld O, Park LP, Glickman SW, Caram LB, Raymond J. Langley, Jenny C. van Velkinburgh, Cairns CB, Rivers EP, Otero RM, Stephen F. Kingsmore, Lalani T, Fowler VG, Woods CW Multiplex PCR to Diagnose Blood Stream Infections in Patients Admitted from the Emergency Department with Sepsis. Journal of Clinical Microbiology 21 2009

Zaas AK, Chen M, Varkey J, Veldman T, Hero AO 3rd, Lucas J, Huang Y, Turner R, Gilbert A, Lambkin-Williams R, Øien NC, Nicholson B, Stephen F. Kingsmore, Carin L, Woods CW, Ginsburg GS Gene expression signatures diagnose influenza and other symptomatic respiratory viral infections in humans. Cell Host & Microbe 17;6(3):207-17 2009 PMID: 19664979 [Abstract]

Kaukola T, Tuimala J, Herva R, Stephen F. Kingsmore, Hallman M. Cord immunoproteins as predictors of respiratory outcome in preterm infants. American Journal of Obstetrics & Gynecology. 200(1):100.e1-8 2009 PMID: 19026401 [Abstract]

Glickman SW, Cairns CB, Otero RM, Woods CW, Tsalik EL, Raymond J. Langley, Jenny C. van Velkinburgh, Park LP, Glickman LT, Fowler Jr VG, Stephen F. Kingsmore, Rivers EP Disease Progression in Hemodynamically Stable Patients Presenting to the Emergency Department with Sepsis Academic Emergency Medicine 2009 (in press)

Hyten D.L., Cannon S.B., Song Q., Weeks N., Fickus E.W., Shoemaker R.C., Spect J.E., Andrew D. Farmer, Gregory D. May and Cregan P.B. High-throughput SNP discover through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence BMC Genomics 2009 (in press)

Deschamps S., la Rota M., Ratashak J., Biddle P., Thureen D., Andrew D. Farmer, Luck S., Beatty M., Nagasawa N., Michael L., Llaca V., Sakai, H., Gregory D. May, Lightner J. and Campbell M.A. Rapid genome-wide SNP discovery in soybean and rice using the Illumina Genome Analyzer. The Plant Genome 2009 (in press)

Buggs R.J.A., Chamala S., Wu W., Gao L., Gregory D. May, Schnable P.S., Soltis D.E., Soltis P.S. and Barbazuk B.W. Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX genotyping. Molecular Ecology 2009 (in press)

Schmutz J., Cannon S.B., Schlueter J., Ma J., Hyten D., Song Q., Mitros T., Nelson W., Gregory D. May, et al. Genome sequence of the paleopolyploid soybean (Glycine max (L.) Merr.). Nature 2009 (in press)