NCGR Publications - 2009

A highly annotated whole-genome sequence of a Korean individual nature.
Jong-Il Kim, Young Seok Ju1, Hansoo Park, Sheehyun Kim, Seonwook Lee, Jae-Hyuk Yi, Joann Mudge, Neil A. Miller, Dongwan Hong, Callum J. Bell, Hye-Sun Kim, In-Soon Chung, Woo-Chung Lee, Ji-Sun Lee, Seung-Hyun Seo, Ji-Young Yun, Hyun Nyun Woo, Heewook Lee, Dongwhan Suh, Seungbok Lee, Hyun-Jin Kim, Maryam Yavartanoo, Minhye Kwak, Ying Zheng, Mi Kyeong Lee, Hyunjun Park, Jeong Yeon Kim, Omer Gokcumen, Ryan E. Mills, Alexander Wait Zaranek, Joseph Thakuria, Xiaodi Wu, Ryan W. Kim, Jim J. Huntley, Shujun Luo, Gary P. Schroth, Thomas D. Wu, HyeRan Kim, Kap-Seok Yang, Woong-Yang Park, Hyungtae Kim, George M. Church, Charles Lee, Stephen F. Kingsmore, & Jeong-Sun Seo.
2009 PMID: 19587683 [Full Text

Generation II DNA sequencing technologies.
Kingsmore SF, van Velkinburgh JC, Mudge J, May GD
Drug Discovery World 2009 Spring:60-74 [Full Text]

Next-generation sequencing technologies and their implications for crop genetics and breeding.
Varshney R. K., Nayak S. N., Gregory D. May and Jackson S. A.
Trends in Biotechnology 2009 PMID: 19679362 [Abstract]

Molecular dynamic simulations of the metallo-beta-lactamase from Bacteroides fragilis in the presence and absence of a tight-binding inhibitor.
Salsbury F. R. Jr., Crowder, M. W., Stephen F. Kingsmore Huntley J. J. 
Journal of Molecular Modeling 2009 PMID: 19039608

Venturing beyond beans and peas: What can we learn from Chamaecrista?
Singer S. R., Maki S. L., Andrew D. Farmer, Ilut D., Gregory D. May, Cannon S. B., and Doyle J. J.
Plant Physiology 151:1-7 2009 PMID: 19755538 [Full Text]

Pigeonpea genomics initiative (PGI): An international effort to improve crop productivity of pigeonpea (Cajanus cajan L.).
Varshney R.K., Penmetsa R.V., Dutta S., Kulwal P.L., Saxena R.K., Datta S., Sharma T.R., Rosen B., N. Carrasquilla-Garcia N., Andrew D. Farmer, Dubey A., Saxena K.B., J. Gao J., Fakrudin B., Singh M.N., Singh B.P., Upadhyaya H.D., Mallikarjuna N., Town C.D., Bruening G.E., He G., Gregory D. May, McCombie R., S. A. Jackson S.A., Singh N.K. and Cook D.R.
Molecular Breeding DOI 10.1007/s11032-009-9327-2 2009

Legume Genomics and Breeding.
Varshney R.K., Thudi M., Gregory D. May, and Jackson S.A.
Plant Breeding Reviews 33:257-304 2009

Applications and methods utilizing the simple semantic web architecture and protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration.
Nelson R.T., Avraham S., Shoemaker R.C., Gregory D. May, Ware D. and Gessler DD
BMC Bioinformatics 10:309doi:10.1186/1471-2105-10 2009

Comparative Genomics of Legumes Three Sequenced Legume Genomes and Many Crop Species: Rich Opportunities for Translational Genomics.
Cannon S.B., Gregory D. May, and Jackson, S.A.
Plant Physiology 10.1104/pp.109.144659 2009

Multiplex PCR to Diagnose Blood Stream Infections in Patients Admitted from the Emergency Department with Sepsis.
Tsalik EL, Jones D, Nicholson B, Waring L, Liesenfeld O, Park LP, Glickman SW, Caram LB, Raymond J. Langley, Jenny C. van Velkinburgh, Cairns CB, Rivers EP, Otero RM, Stephen F. Kingsmore, Lalani T, Fowler VG, Woods CW
Journal of Clinical Microbiology 21 2009

Gene expression signatures diagnose influenza and other symptomatic respiratory viral infections in humans.
Zaas AK, Chen M, Varkey J, Veldman T, Hero AO 3rd, Lucas J, Huang Y, Turner R, Gilbert A, Lambkin-Williams R, Ă˜ien NC, Nicholson B, Stephen F. Kingsmore, Carin L, Woods CW, Ginsburg GS
Cell Host & Microbe 17;6(3):207-17 2009 PMID: 19664979 [Abstract]

Cord immunoproteins as predictors of respiratory outcome in preterm infants.
Kaukola T, Tuimala J, Herva R, Stephen F. Kingsmore, Hallman M.
American Journal of Obstetrics & Gynecology. 200(1):100.e1-8 2009 PMID: 19026401 [Abstract]

Disease Progression in Hemodynamically Stable Patients.
Glickman SW, Cairns CB, Otero RM, Woods CW, Tsalik EL, Raymond J. Langley, Jenny C. van Velkinburgh, Park LP, Glickman LT, Fowler Jr VG, Stephen F. Kingsmore, Rivers EP 
Presenting to the Emergency Department with Sepsis Academic Emergency Medicine 2009 (In Press).

High-throughput SNP discover through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence.
Hyten D.L., Cannon S.B., Song Q., Weeks N., Fickus E.W., Shoemaker R.C., Spect J.E., Andrew D. Farmer, Gregory D. May and Cregan P.B.
BMC Genomics 2009 (in press)

Rapid genome-wide SNP discovery in soybean and rice using the Illumina Genome Analyzer.
Deschamps S., la Rota M., Ratashak J., Biddle P., Thureen D., Andrew D. Farmer, Luck S., Beatty M., Nagasawa N., Michael L., Llaca V., Sakai, H., Gregory D. May, Lightner J. and Campbell M.A.
The Plant Genome 2009 (in press)

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX genotyping.
Buggs R.J.A., Chamala S., Wu W., Gao L., Gregory D. May, Schnable P.S., Soltis D.E., Soltis P.S. and Barbazuk B.W.
Molecular Ecology 2009 (in press)

Genome sequence of the paleopolyploid soybean (Glycine max (L.) Merr.).
Schmutz J., Cannon S.B., Schlueter J., Ma J., Hyten D., Song Q., Mitros T., Nelson W., Gregory D. May, et al.
Nature 2009 (in press)