NCGR Publications - 2016

Genome Sequence of Janthinobacterium sp. CG23_2, a Violacein-Producing Isolate from an Antarctic Supraglacial Stream.
Smith HJ, Foreman CM, Akiyama T, Franklin MJ, Devitt NP, Ramaraj T.
GenomeAnnounc. 2016 Jan 28;4(1). pii: e01468-15. doi: 10.1128/genomeA.01468-15. PMID: 26823573

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.
David John Bertioli, Steven B Cannon, Lutz Froenicke, Guodong Huang, Andrew D Farmer, Ethalinda K S Cannon, Xin Liu, Dongying Gao, Josh Clevenger, Sudhansu Dash, Longhui Ren, Márcio C Moretzsohn, Kenta Shirasawa, Wei Huang, Bruna Vidigal, Brian Abernathy, Ye Chu, Chad E Niederhuth, Pooja Umale, Ana Cláudia G Araújo, Alexander Kozik, Kyung Do Kim, Mark D Burow, Rajeev K Varshney, Xingjun Wang, Xinyou Zhang, Noelle Barkley, Patrícia M Guimarães, Sachiko Isobe, Baozhu Guo, Boshou Liao, H Thomas Stalker, Robert J Schmitz, Brian E Scheffler, Soraya C M Leal-Bertioli, Xu Xun, Scott A Jackson, Richard Michelmore & Peggy Ozias-Akins
Nature Genetics. 2016 Feb 22; doi: 10.1038/ng.3517. PMID: 26901068

Discriminating power of microsatellites in cranberry organelles for taxonomic studies in Vaccinium and Ericaceae.
Brandon Schlautman, Giovanny Covarrubias-Pazaran, Diego Fajardo, Shawn Steffan, Juan Zalapa
Genetic Resources and Crop Evolution. 2016 Feb; doi:10.1007/s10722-016-0371-6

Amylose content decreases during tuber development in potato.
Jansky S, Fajardo D.
J Sci Food Agric. 2016 Mar 2; doi: 10.1002/jsfa.7673. [Epub ahead of print] PMID: 26931799

Chapter 8 - PeanutBase and Other Bioinformatic Resources for Peanut
Sudhansu Dash, Ethalinda K.S. Cannon, Scott R. Kalberer, Andrew D. Farmer and Steven B. Cannon
Peanuts Genetics, Processing, and Utilization, Edited by: Thomas Stalker and Richard Wilson, AOCS Press, 2016, Pages 241-252, doi: 10.1016/B978-1-63067-038-2.00008-3. ISBN: 978-1-63067-038-2

Genes and Small RNA Transcripts Exhibit Dosage-Dependent Expression Pattern in Maize Copy-Number Alterations.
Zuo T, Zhang J, Lithio A, Dash S, Weber DF, Wise R, Nettleton D, Peterson T.
Genetics. 2016 Jul;203(3):1133-47. doi: 10.1534/genetics.116.188235. Epub 2016 Apr 29. PMID: 27129738

Complete Genome Sequence of Streptomyces venezuelae ATCC 15439, Producer of the Methymycin/Pikromycin Family of Macrolide Antibiotics, Using PacBio Technology
Jingxuan He, Anitha Sundararajan, Nicholas P. Devitt, Faye D. Schilkey, Thiruvarangan Ramaraj, and Charles E. Melançon III
Genome Announc. 2016 May 5;4(3). pii: e00337-16. doi: 10.1128/genomeA.00337-16. PMID: 27151802

De novo assembly of a tadpole shrimp (Triops newberryi) transcriptome and preliminary differential gene expression analysis.
Horn RL, Ramaraj T, Devitt NP, Schilkey FD, Cowley DE.
Mol Ecol Resour. 2016 Jun 13. doi: 10.1111/1755-0998.12555. [Epub ahead of print] PMID: 27292122

Novel Meiotic miRNAs and Indications for a Role of PhasiRNAs in Meiosis.
Dukowic-Schulze S, Sundararajan A, Ramaraj T, Kianian S, Pawlowski WP, Mudge J, Chen C.
Front Plant Sci. 2016 Jun 2;7:762. doi: 10.3389/fpls.2016.00762. eCollection 2016. PMID: 27313591

Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor.
Varma Penmetsa R, Carrasquilla-Garcia N, Bergmann EM, Vance L, Castro B, Kassa MT, Sarma BK, Datta S, Farmer AD, Baek JM, Coyne CJ, Varshney RK, von Wettberg EJ, Cook DR.
New Phytol. 2016 May 19. doi: 10.1111/nph.14010. [Epub ahead of print] PMID: 27193699

Characterization, correction and de novo assembly of an Oxford Nanopore genomic dataset from Agrobacterium tumefaciens.
Deschamps S, Mudge J, Cameron C, Ramaraj T, Anand A, Fengler K, Hayes K, Llaca V, Jones TJ, May G.
Sci Rep. 2016 Jun 28;6:28625. doi: 10.1038/srep28625. PMID: 27350167

A survey of the sorghum transcriptome using single-molecule long reads.
Salah E. Abdel-Ghany, Michael Hamilton, Jennifer L. Jacobi, Peter Ngam, Nicholas Devitt, Faye Schilkey, Asa Ben-Hur, Anireddy S. N. Reddy.
Nat. Commun. 7:11706 doi: 10.1038/ncomms11706 (2016). PMID: 27339290

Augmenting Chinese hamster genome assembly by identifying regions of high confidence.
Vishwanathan N, Bandyopadhyay AA, Fu HY, Sharma M, Johnson KC, Mudge J, Ramaraj T, Onsongo G, Silverstein KA, Jacob NM, Le H, Karypis G, Hu WS.
Biotechnol J. 2016 Jul 4. doi: 10.1002/biot.201500455. [Epub ahead of print] PMID: 27374913

 


 

Copyright 2016 National Center for Genome Resources | Contact |