2012 NCGR Publications

Underlined authors indicate NCGR scientists.

Identification and mapping of conserved ortholog set (COS) II sequences of cacao and their conversion to SNP markers for marker-assisted selection in Theobroma cacao and comparative genomics studies. David N. Kuhn, Don Livingstone III, Dorrie Main, Ping Zheng, Chris Saski, F. Alex Feltus, Keithanne Mockaitis, Andrew D. Farmer, Gregory D. May, Raymond J. Schnell, Juan C. Motamayor. Tree Genetics & Genomes (2012) 8:97–111.

Analyzing the meiotic transcriptome using isolated meiocytes. Changbin Chen and Ernest F. Retzel, Methods in Molecular Biology, Vol. Plant Meiosis. Edited by Wojtek Pawlowski and Mathilde Grelon, Springer Inc. In press, 2012

Coverage based consensus calling (CBCC) of short sequence reads and comparison of cbcc-results for the identification of SNPs in chickpea, a crop species without the reference genome. Sarwar Azam, Vivek Thakur, R. Pradeep, Trushar Shah, B. Jayashree, A. BhanuPrakash, Andrew D Farmer, David J. Studholme, Greg D. May, David Edwards, Jonathan D. G. Jones, Rajeev Varshney. American Journal of Botany. In press, 2012.

Genome-enabled insights into legume biology. Nevin D. Young and Arvind K. Bharti. Annu Rev Plant Biol 63: x-x. doi: 10.1146/annurev-arplant-042110-103754. In press, 2012.

A comprehensive transcriptome assembly of pigeonpea (Cajanus cajan L.) using Sanger and second-generation sequencing platforms. Himabindu Kudapa, Arvind K. Bharti, Steven B. Cannon, Andrew D. Farmer, Benjamin Mulaosmanovic, Robin Kramer, Abhishek Bohra, Nathan T. Weeks, John A. Crow, Reetu Tuteja, Trushar Shah, Sutapa Dutta, Deepak K. Gupta, Archana Singh, Kishor Gaikwad, Tilak R. Sharma, Gregory D. May, Nagendra K. Singh, Rajeev K. Varshney. Molecular Plant. In press, 2012.