NCGR Publications - 2010
 

Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis.
Sergio E. Baranzini, Joann Mudge, Jennifer C. van Velkinburgh , Pouya Khankhanian, Irina Khrebtukova, Neil A. Miller , Lu Zhang, Andrew D. Farmer, Callum J. Bell, Ryan W. Kim, Gregory D. May, Jimmy E. Woodward , Stacy J. Caillier, Joseph P. McElroy, Refujia Gomez, Marcelo J. Pando, Leonda E. Clendenen, Elena E. Ganusova, Faye D. Schilkey, Thiruvarangan Ramaraj , Omar A. Khan, Jim J. Huntley, Shujun Luo, Pui-yan Kwok, Thomas D. Wu, Gary P. Schroth, Jorge R. Oksenberg, Stephen L. Hauser & Stephen F. Kingsmore.
Nature 2010 Apr 29; cover [PMID: 20428171] 
 

Genome sequencing and analysis of the model grass Brachypodium distachyon.
May G.D. Participant & Co-Author
Nature 2010 [PMID: 20148030]

 

Genome sequence of the palaeopolyploid soybean. 
Jeremy Schmutz, Steven B. Cannon, Jessica Schlueter, Jianxin Ma, Therese Mitros, William Nelson, David L. Hyten, Qijian Song, Jay J. Thelen, Jianlin Cheng, Dong Xu1, Uffe Hellsten, Gregory D. May, Yeisoo Yu, Tetsuya Sakurai, Taishi Umezawa, Madan K. Bhattacharyya, Devinder Sandhu, Babu Valliyodan, Erika Lindquist, Myron Peto, David Grant, Shengqiang Shu, David Goodstein, Kerrie Barry, Montona Futrell-Griggs, Brian Abernathy, Jianchang Du, Zhixi Tian, Liucun Zhu, Navdeep Gill, Trupti Joshi, Marc Libault, Anand Sethuraman, Xue-Cheng Zhang, Kazuo Shinozaki, Henry T. Nguyen, Rod A. Wing, Perry Cregan, James Specht, Jane Grimwood, Dan Rokhsar, Gary Stacey, Randy C. Shoemaker & Scott A. Jackson.
Nature 2010 [PMID: 20075913
 

Multiplex PCR to diagnose bloodstream infections in patients admitted from the emergency department with sepsis. 
Tsalik EL, Jones D, Nicholson B, Waring L, Liesenfeld O, Park LP, Glickman SW, Caram LB, Langley RJ, van Velkinburgh JC, Cairns CB, Rivers EP, Otero RM, Kingsmore SF, Lalani T, Fowler VG, Woods CW.
J Clin Microbiol. 2010 48:26-33. [PMID: 19846634]
 

Disease progression in hemodynamically stable patients presenting to the emergency department with sepsis. 
Glickman SW, Cairns CB, Otero RM, Woods CW, Tsalik EL, Langley RJ, van Velkinburgh JC, Park LP, Glickman LT, Fowler VG Jr, Kingsmore SF, Rivers EP.
Acad Emerg Med. 2010 17:383-90. PMID: 20370777 [Abstract] 

 

Reaching the depth of the Chinese hamster ovary cell transcriptome. 
Jacob NM, Kantardjieff A, Yusufi FN, Retzel EF, Mulukutla BC, Chuah SH, Yap M, Hu WS.
Biotechnol Bioeng. 2010 Apr 1;105(5):1002-9 [PMID: 19882695] [Abstract]
 

High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. 
Hyten DL, Cannon SB, Song Q, Weeks N, Fickus EW, Shoemaker RC, Specht JE, Farmer AD, May GD, Cregan PB.
BMC Genomics 2010 Jan 15;11(1):38 [PMID: 20078886] [Full Text]
 

Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection. 
Libault M, Farmer A , Brechenmacher L, Drnevich J, Langley RJ, Bilgin DD, Radwan O, Neece DJ, Clough SJ, May GD , Stacey G.
Plant Physiol. 2010 Feb;152(2):541-52. Epub 2009 Nov 20. [PMID: 19933387]
 

CCL18 predicts intraventricular hemorrhage in very preterm infants. 
Kallankari H, Kaukola T, Ojaniemi M, Herva R, Perhomaa M, Vuolteenaho R, Kingsmore SF, Hallman M. Chemokine.
Ann Med. 2010 Sep;42(6):416-25. PubMed PMID: 20608885.
 

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX genotyping. 
Buggs R.J.A., Chamala S., Wu W., Gao L., May G.D., Schnable P.S., Soltis D.E., Soltis P.S. and Barbazuk B.W. 
Molecular Ecology 19, 132-146.
 

Soybean root hairs: A valuable system to investigate plant biology at the cellular level.
Libault M., Farmer A., Brechenmacher L., May G.D. and Stacey G. 
Plant Signal Behav. 19;5(4). 
 

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome.
Severin A.J., Woody J.L., Bolon Y.-T., Joseph B., Diers B.W., Farmer A.D., Muehlbauer G.J., Nelson R.T., Grant D., Specht J.E., Graham M.A., Cannon S.B., May G.D., Vance C.P. and Shoemaker R.C. 
BMC Plant Biology 2010,*10:*160doi:10.1186/1471-2229-10-160.
 

Prediction of novel miRNAs and associated target genes in Glycine max.
Joshi T., Yan Z., Libault M., Findley S., Sherrier J., Farmer A., May G., Meyers B., Xu D. and Stacey G.
BMC Bioinformatics 11:S14.
 

Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean.
Bolon Y.-T., Joseph B., Cannon S., Graham M., Diers B., Farmer A., May G.D., Muehlbauer G., Specht J., Tu Z.J., Weeks N., Xu W., Shoemaker R. and Vance C. 
BMC Plant Biology *10:*41.c
 

Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration.
Nelson R.T., Avraham S., Shoemaker R.C., May G.D., Ware D. and Gessler D.D.G. 
BioData Mining 2010, *3:*3 doi:10.1186/1756-0381-3-3.
 

Rapid genome-wide SNP discovery in soybean and rice using the Illumina Genome Analyzer. 
Deschamps S., la Rota M., Ratashak J., Biddle P., Thureen D., Farmer A., Luck S., Beatty M., Nagasawa N., Michael L., Llaca V., Sakai, H., May G., Lightner J. and Campbell M.A.
The Plant Genome 3:1.
 

Polyploidy did not predate the evolution of nodulation in all legumes.
Cannon S.B., Ilut D., Farmer A.D., Maki S.L., May G.D., Singer S.R. and Doyle J.J. 
PLoS One. 2010 Jul 16;5(7):e11630.
 

An integrated transcriptome atlas of the crop model, Glycine max, and its use in comparative analyses in plants. 
Libault M., Farmer A., Joshi T., Takahashi K., Langley R.J., Franklin L.D., He J., Xu D., May G. and Stacey G. 
Plant J. 2010 Jul 1;63(1):86-99. 
 

An integrative approach to genomic introgression mapping. 
Severin, A.J., Peiffer G., Xu, W.W., Hyten D.L., Bucciarelli B., O‚ÄôRourke J.A., Grant D., Farmer A.D., May G.D., Vance C.P., Shoemaker, R.C. and Stupar R.M. 
Plant Physiology.
 

Gene expression patterns are correlated with genomic and genic structure in soybean. 
Woody J.L., Severin A.A., Bolon Y.-T., Joseph B., Diers B., Farmer A., Weeks N., Muehlbauer G., Nelson R., Grant D., Specht J., Graham M., Cannon S., May G., Vance C. and Shoemaker R. 
Genome.  

 

 

C6/36 Aedes albopictus cells have a dysfunctional antiviral RNA interference response
D. E. Brackney, J. C. Scott, F. Sagawa, J. E. Woodward, N. A. Miller, F. D. Schilkey, J. Mudge, J. Wilusz, K. E. Olson and C. D. Blair

PLoS neglected tropical diseases. 2010; 4(10):e856.


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