LIS contains agronomically useful information in legume species, including genome sequences, genetic maps, genes, gene families, and mapped traits. The "legumeinfo" site makes use of several open-source projects (Intermine, Tripal, Chado, GBrowse, JBrowse, and many others), facilitating more efficient collaboration with other research groups using and developing these tools.
S. Redsun, S. Hokin, C. Cameron, A. Cleary, J. Berendzen, S. Dash, A. Brown, A. Wilkey, J. Campbell, W. Huang, S. Kalberer, N. Weeks, S. Cannon and A. Farmer.
Doing Genetic and Genomic Biology Using the Legume Information System and Associated Resources
Methods Mol Biol, 2443, 81--100, 2022, PMID 35037201
Legume Information SystemD. Bertioli, J. Clevenger, I. Godoy, H. Stalker, S. Wood, J. Santos, C. Ballén-Taborda, B. Abernathy, V. Azevedo, J. Campbell, C. Chavarro, Y. Chu, A. Farmer, D. Fonceka, D. Gao, J. Grimwood, N. Halpin, W. Korani, M. Michelotto, P. Ozias-Akins, J. Vaughn, R. Youngblood, M. Moretzsohn, G. Wright, S. Jackson, S. Cannon, B. Scheffler and S. Leal-Bertioli.
Legacy genetics of Arachis cardenasii in the peanut crop shows the profound benefits of international seed exchange
Proc Natl Acad Sci U S A, 118(38), 2021, PMID 34518223
Legume Information System Legume Federation PeanutBaseJ. Quilbé, L. Lamy, L. Brottier, P. Leleux, J. Fardoux, R. Rivallan, T. Benichou, R. Guyonnet, M. Becana, I. Villar, O. Garsmeur, B. Hufnagel, A. Delteil, D. Gully, C. Chaintreuil, M. Pervent, F. Cartieaux, M. Bourge, N. Valentin, G. Martin, L. Fontaine, G. Droc, A. Dereeper, A. Farmer, C. Libourel, N. Nouwen, F. Gressent, P. Mournet, A. D'Hont, E. Giraud, C. Klopp and J. Arrighi.
Genetics of nodulation in Aeschynomene evenia uncovers mechanisms of the rhizobium-legume symbiosis
Nat Commun, 12(1), 829, 2021, PMID 33547303
Legume Information System Legume FederationG. Bauchet, K. Bett, C. Cameron, J. Campbell, E. Cannon, S. Cannon, J. Carlson, A. Chan, A. Cleary, T. Close, D. Cook, A. Cooksey, C. Coyne, S. Dash, R. Dickstein, A. Farmer, D. Fernández-Baca, S. Hokin, E. Jones, Y. Kang, M. Monteros, M. Muñoz-Amatriaín, K. Mysore, C. Pislariu, C. Richards, A. Shi, C. Town, M. Udvardi, E. Wettberg, N. Young and P. Zhao.
The future of legume genetic data resources: Challenges, opportunities, and priorities
Legume Science, n/a(n/a), e16, 2019, DOI 10.1002/leg3.16
Legume Information System Legume Federation PeanutBase Medicago HapMap ProjectS. Lo, M. Munoz-Amatriain, S. Hokin, N. Cisse, P. Roberts, A. Farmer, S. Xu and T. Close.
A genome-wide association and meta-analysis reveal regions associated with seed size in cowpea [Vigna unguiculata (L.) Walp]
Theor. Appl. Genet., 2019
Legume Information System Legume FederationD. Bertioli, J. Jenkins, J. Clevenger, O. Dudchenko, D. Gao, G. Seijo, S. Leal-Bertioli, L. Ren, A. Farmer, M. Pandey, S. Samoluk, B. Abernathy, G. Agarwal, C. Ballén-Taborda, C. Cameron, J. Campbell, C. Chavarro, A. Chitikineni, Y. Chu, S. Dash, M. Baidouri, B. Guo, W. Huang, K. Kim, W. Korani, S. Lanciano, C. Lui, M. Mirouze, M. Moretzsohn, M. Pham, J. Shin, K. Shirasawa, S. Sinharoy, A. Sreedasyam, N. Weeks, X. Zhang, Z. Zheng, Z. Sun, L. Froenicke, E. Aiden, R. Michelmore, R. Varshney, C. Holbrook, E. Cannon, B. Scheffler, J. Grimwood, P. Ozias-Akins, S. Cannon, S. Jackson and J. Schmutz.
The genome sequence of segmental allotetraploid peanut Arachis hypogaea
Nature Genetics, 51(5), 877--884, 2019, DOI 10.1038/s41588-019-0405-z
Legume Information System Legume Federation PeanutBaseS. Lonardi, M. Muñoz-Amatriaín, Q. Liang, S. Shu, S. Wanamaker, S. Lo, J. Tanskanen, A. Schulman, T. Zhu, M. Luo, H. Alhakami, R. Ounit, A. Hasan, J. Verdier, P. Roberts, J. Santos, A. Ndeve, J. Doležel, J. Vrána, S. Hokin, A. Farmer, S. Cannon and T. Close.
The genome of cowpea (Vigna unguiculata [L.] Walp.)
The Plant Journal, 98(5), 767--782, 2019, DOI 10.1111/tpj.14349
Legume Information System Legume FederationA. Cleary and A. Farmer.
Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny
Bioinformatics, 34(9), 1562--1564, 2017, DOI 10.1093/bioinformatics/btx757
Legume Information System Legume FederationJ. Singh, S. Kalberer, V. Belamkar, T. Assefa, M. Nelson, A. Farmer, W. Blackmon and S. Cannon.
A transcriptome-SNP-derived linkage map of Apios americana (potato bean) provides insights about genome re-organization and synteny conservation in the phaseoloid legumes
Theoretical and Applied Genetics, 131(2), 333--351, 2017, DOI 10.1007/s00122-017-3004-3
Legume Information SystemM. Munoz-Amatriain, H. Mirebrahim, P. Xu, S. Wanamaker, M. Luo, H. Alhakami, M. Alpert, I. Atokple, B. Batieno, O. Boukar, S. Bozdag, N. Cisse, I. Drabo, J. Ehlers, A. Farmer, C. Fatokun, Y. Gu, Y. Guo, B. Huynh, S. Jackson, F. Kusi, C. Lawley, M. Lucas, Y. Ma, M. Timko, J. Wu, F. You, N. Barkley, P. Roberts, S. Lonardi and T. Close.
Genome resources for climate-resilient cowpea, an essential crop for food security
Plant J., 89(5), 1042--1054, 2017
Legume Information System Legume FederationR. Penmetsa, N. Carrasquilla-Garcia, E. Bergmann, L. Vance, B. Castro, M. Kassa, B. Sarma, S. Datta, A. Farmer, J. Baek, C. Coyne, R. Varshney, E. Wettberg and D. Cook.
Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor
New Phytologist, 211(4), 1440--1451, 2016, DOI 10.1111/nph.14010
Legume Information System Legume FederationD. Bertioli, S. Cannon, L. Froenicke, G. Huang, A. Farmer, E. Cannon, X. Liu, D. Gao, J. Clevenger, S. Dash, L. Ren, M. Moretzsohn, K. Shirasawa, W. Huang, B. Vidigal, B. Abernathy, Y. Chu, C. Niederhuth, P. Umale, A. Araújo, A. Kozik, K. Kim, M. Burow, R. Varshney, X. Wang, X. Zhang, N. Barkley, P. Guimarães, S. Isobe, B. Guo, B. Liao, H. Stalker, R. Schmitz, B. Scheffler, S. Leal-Bertioli, X. Xun, S. Jackson, R. Michelmore and P. Ozias-Akins.
The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut
Nature Genetics, 48(4), 438--446, 2016, DOI 10.1038/ng.3517
Legume Information System Legume Federation PeanutBaseM. Gonzales, E. Archuleta, A. Farmer, K. Gajendran, D. Grant, R. Shoemaker, W. Beavis and M. Waugh.
The Legume Information System (LIS): an integrated information resource for comparative legume biology
Nucleic Acids Res., 33(Database issue), D660--665, 2005
Legume Information System
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Effective November 4, 2019
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USER IS SOLELY RESPONSIBLE FOR THE CONTENTS OF HIS/HER SUBMISSIONS TO THE WEBSITE. USER REPRESENTS THAT HE/SHE HAS ALL RIGHTS NECESSARY TO POST THE INFORMATION, CONTENT OR MATERIALS SUBMITTED TO THE WEBSITE WITHOUT VIOLATING THE COPYRIGHTS OR ANY OTHER INTELLECTUAL PROPERTY RIGHTS OF THIRD PARTIES, AND THAT NO SUBMISSION BY THE USER WILL VIOLATE APPLICABLE LAWS OR THE RIGHTS OF THIRD PERSONS. USER HEREBY INDEMNIFIES AND AGREES TO HOLD HARMLESS OWNER AND ITS OFFICERS, DIRECTORS, SHAREHOLDERS, EMPLOYEES, AGENTS AND REPRESENTATIVES FROM ANY AND ALL CLAIMS ASSERTED AGAINST THEM AND ANY LIABILITY, LOSS, DAMAGE, COSTS OR EXPENSES (INCLUDING REASONABLE ATTORNEYS' FEES) INCURRED OR SUFFERED BY THEM IN CONNECTION WITH OR ARISING OUT OF USER'S ACTS OR OMISSIONS OR THE MATERIALS OR INFORMATION USER SUBMITS TO THE WEBSITE.
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RESTRICTION, SUSPENSION AND TERMINATION
PROCEDURES FOR REQUESTING THE REMOVAL OF INFRINGING MATERIAL
Owner respect the intellectual property of others. If a person or organization (a "Copyright Owner") believes that his, her or its work has been copied on the Website in a way that constitutes copyright infringement, provide Owner the written information specified below. Please note that this procedure is exclusively for the Copyright Owner to notify Owner that copyrighted material of the Copyright Owner has been infringed. If a Copyright Owner believes that its own copyrighted work has been copied in a way that constitutes copyright infringement and is accessible via the Website, the Copyright Owner may notify Owner's copyright agent in accordance with the following procedures and the Digital Millennium Copyright Act of 1998 (DMCA).
For a complaint to be valid under the DMCA, the Copyright Owner must provide the following information when providing notice of the claimed copyright infringement: (1) a physical or electronic signature of a person authorized to act on behalf of the Copyright Owner; (2) identification of the copyrighted work or other intellectual property that the Copyright Owner owns and claims to have been infringed; (3) identification of the material that the Copyright Owner claims is infringing as well as information reasonably sufficient to permit Owner to locate the material on the Website; (4) the address, telephone number, and e-mail address of the Copyright Owner or its designee; (5) a statement by the Copyright Owner that the Copyright Owner as the complaining party has a good faith belief that use of the material in the manner complained of is not authorized by the Copyright Owner, its agent, or the law; and (6) a statement, made under penalty of perjury, that the information in the notification is accurate, and that the complaining party is authorized to act on behalf of the Copyright Owner of an exclusive right that is allegedly infringed. The foregoing information must be submitted as a written notification to the following Designated Agent:
- Site: www.ncgr.org
- Designated agent for infringement claims: Callum Bell, President
- Address:National Center for Genome Resources2935 Rodeo Park Drive EastSanta Fe, New Mexico 87505
- Telephone of designated agent: 505-982-7840
- E-mail of designated agent: email@example.com
WE CAUTION YOU THAT UNDER FEDERAL LAW, IF YOU KNOWINGLY MISREPRESENT THAT ONLINE MATERIAL IS INFRINGING, YOU MAY BE SUBJECT TO CIVIL PENALTIES. THESE INCLUDE MONETARY DAMAGES, COURT COSTS, AND ATTORNEYS' FEES INCURRED BY US, BY ANY COPYRIGHT OWNER, OR BY ANY COPYRIGHT OWNER'S LICENSEE THAT IS INJURED AS A RESULT OF OUR RELYING UPON YOUR MISREPRESENTATION. YOU MAY ALSO BE SUBJECT TO CRIMINAL PROSECUTION FOR PERJURY.
This information should not be construed as legal advice. For further details on the information required for valid DMCA notifications, see 17 U.S.C. 512(c)(3).
NOTE: This information is provided exclusively for notifying the service providers referenced above that the Copyright Owner's own copyrighted material(s) might have been infringed. All other inquiries, including technical requests, reports of e-mail abuse and third party reports of piracy, will not receive a response through this process.
HOW TO CONTACT OWNER